Using ChIP-seq and DNase-seq to Identify Transcription Factor... - Xialoe Shirley Liu - ISMB 2014
STAT115 Chapter 13.7 DNase-seq
DNase-seq
Hunter Fraser, Pooled ChIP-seq identifies QTLs affecting transcription factor binding
CRUNCH - a tool to process transcription factor ChIP-seq data
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ATAC Sequencing
DNase-seq predicts regions of rotational nucleosome stability... - Deborah Winter - RECOMB/RSG 2012
Introduction to ChiP Sequencing and Analysis
DNase-Seq Introduction
STAT115 Chapter 13.3 Infer Transcription Factor Binding from Histone Mark Dynamics
ChIP-Exo Method: Identifying Protein-DNA Interactions: Near Base Pair Precision l Protocol Preview
Landscapes of Human cis-regulatory Elements and Transcription Factor Binding Sites...
Gene Expression Analysis and DNA Microarray Assays
How CUT&RUN Profiles Chromatin | Cell Signaling Technology
MCB 182 Lecture 8.9 - Narrow vs broad peaks, IDR
DNase Seq
Analysis of chromatin mapping data: Sequencing tracks and heatmaps
7. ChIP-seq Analysis; DNA-protein Interactions
Inference of Gene Signatures Associate with Response and Resistance to Targeted
STAT115 Chapter 13.6 Infer TF from Differential Genes Using LISA
ChIP-Seq | Chromatin Immunoprecipitation Sequencing | Applications of ChIP-Seq | ChIP-Seq Facts
MIA: Anshul Kundaje, Integrative deep learning frameworks for regulatory genomics & epigenomics
Lecture05 - Epigenomics, HMMs - MLCB24
Predicting 3D genome folding from DNA sequence - Geoff Fudenberg - RegSys - ISMB 2020 Posters
