Neva Durand: Juicebox Hands-on Session - September 30, 2020
Intro to Juicebox on the Web Tutorial
Juicebox Guide
Juicebox on the Web Tutorial Part 7: Interactive Figure
Juicebox on the Web Tutorial Part 1: Loading maps
Building Jars for Juicebox and Juicer Tools
Juicebox on the Web Tutorial Part 2: Loading Annotations
Juicebox on the Web Tutorial Part 5: Hosting on Dropbox/Drive/Geo
Tue 19 Sep, 11:00 UTC - Introduction to Manual Curation - HiC and JBrowse
Juicebox on the Web Tutorial Part 6: Visualize from ENCODE website
John Stamatoyannopoulos: High-resolution maps of regulatory DNA: Key insights & forward perspective
Using Juicebox Assembly Tools to assemble the barrel medic
Juicebox on the Web Tutorial Part 3: Comparing Maps
HiGlass Visualization in the 4DN Data Portal
Miten Jain: Human genome assembly and analysis using R10.4.1, Kit 14, and duplex data
MCB 182 Lecture 10.5 - Visualization of Hi-C data, bias in the Hi-C assay
Use Nucleome Browser and a custom HiGlass viewer to synchronously view multimodal datasets
Looking beyond pairwise 3D conformation of the genome by MC-4C
Achieving Chromosome-Scale Assemblies with Arima Hi-C
Cistrome Explorer: Visualization Tool for Exploring Epigenomics Data with Associated Metadata