Lecture 06, concept 21: Calculating binding free energy - alchemical transformation
Lecture 06, concept 22: Binding free energy - the free energy cycle & DDG values
Lecture 13, concept 01: Free energy calculation provides good relative binding free energies
#4 The Application of Alchemical Free Energy Perturbation Calculations to More Robust...Bertaccini
Lecture 06, concept 20: Potential of mean force - free energy along a reaction coordinate
Introduction to free energy calculations
Lecture 06, concept 16: Energy minimisation avoids clashes, which avoids crashes
David Minh - Binding pose prediction using absolute binding free energy calculations
BioSimSpace Free Energy
Lecture 09, concept 21: Conformational transitions - induced & selected fit
Alchemical free energy calculations using pmx
Using molecular dynamics to calculate mutational free energy
Lecture 06, concept 14: Biomolecules need to be solvated (e.g. in water)
Free Energy Calculations with BioSimSpace
Lecture 06, concept 10: Flowchart of a typical simulation - femtosecond steps
Free Energy Calculator Tutorial 2: Absolute Ligand Solvator
Jenke Scheen
Lecture 06, concept 19: Markov state models - slow processes from many short simulations
Lecture 06, concept 18: Example biological problems we can target
Hannah Baumann: Breaking free from ligand similarity restrictions in binding free energy calculation
